HyperAIHyperAI

Command Palette

Search for a command to run...

Pan-Cancer scRNA-Seq Cancer Single-Cell Transcriptional Atlas Dataset

Date

12 hours ago

Publish URL

www.kaggle.com

License

CC BY 4.0

This dataset contains transcriptome expression data from 7,930 single cells, covering three different biological states: healthy immune baseline, liquid tumor (myeloid leukemia), and solid tumor microenvironment (melanoma). It aims to build a cross-cohort integrated single-cell analysis benchmark to provide a benchmark for algorithm performance evaluation and methodological comparison, multi-cohort batch effect correction, immune exhaustion state analysis, and cross-tumor type biomarker mining.

Dataset composition:
1. Cohort A: Healthy immune baseline (approximately 2,700 cells)

  • Source: 10x Genomics PBMC3k
  • Biological background: Peripheral blood mononuclear cells (PBMCs) from healthy donors were used as a baseline control for immune homeostasis.
  • Purpose: To compare changes in tumor-associated immune status.

2. Cohort B: Liquid tumor/myeloid leukemia (approximately 2,730 cells)

  • Source: Paul et al., 2015
  • Biological background: Single-cell transcriptome data of myeloid progenitor cells and leukemia-related cell states
  • Function: Represents a model of hematologic malignancies

3. Cohort C: Solid tumor microenvironment (approximately 2,500 cells)

  • Source: Tumor Immune Cell Atlas (TICAtlas)
  • Biological background: Immune cells and malignant cells originating from the microenvironment of solid tumors such as melanoma, including exhausted T cells, macrophages, and tumor cells.
  • Application: Used to study immunosuppression and cellular heterogeneity in solid tumors.

Build AI with AI

From idea to launch — accelerate your AI development with free AI co-coding, out-of-the-box environment and best price of GPUs.

AI Co-coding
Ready-to-use GPUs
Best Pricing

HyperAI Newsletters

Subscribe to our latest updates
We will deliver the latest updates of the week to your inbox at nine o'clock every Monday morning
Powered by MailChimp