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Pan-Cancer scRNA-Seq Cancer Single-Cell Transcriptional Atlas Dataset
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CC BY 4.0
This dataset contains transcriptome expression data from 7,930 single cells, covering three different biological states: healthy immune baseline, liquid tumor (myeloid leukemia), and solid tumor microenvironment (melanoma). It aims to build a cross-cohort integrated single-cell analysis benchmark to provide a benchmark for algorithm performance evaluation and methodological comparison, multi-cohort batch effect correction, immune exhaustion state analysis, and cross-tumor type biomarker mining.
Dataset composition:
1. Cohort A: Healthy immune baseline (approximately 2,700 cells)
- Source: 10x Genomics PBMC3k
- Biological background: Peripheral blood mononuclear cells (PBMCs) from healthy donors were used as a baseline control for immune homeostasis.
- Purpose: To compare changes in tumor-associated immune status.
2. Cohort B: Liquid tumor/myeloid leukemia (approximately 2,730 cells)
- Source: Paul et al., 2015
- Biological background: Single-cell transcriptome data of myeloid progenitor cells and leukemia-related cell states
- Function: Represents a model of hematologic malignancies
3. Cohort C: Solid tumor microenvironment (approximately 2,500 cells)
- Source: Tumor Immune Cell Atlas (TICAtlas)
- Biological background: Immune cells and malignant cells originating from the microenvironment of solid tumors such as melanoma, including exhausted T cells, macrophages, and tumor cells.
- Application: Used to study immunosuppression and cellular heterogeneity in solid tumors.
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